PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G180000.2

Common Name

B456_004G180000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 279aa MW: 31458.2 Da PI: 9.7014

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G180000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Gorai.004G180000.2 25 KPRLRWTADLHDRFVDAVTKLGGPNKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 79 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.847	22	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-31	22	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-16	25	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-24	25	80	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-9	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-22	123	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MERLSYGGNG NYGYENGVVM TRDPKPRLRW TADLHDRFVD AVTKLGGPNK ATPKSVLRLM 60 GLKGLTLYHL KSHLQKYRLG QQSRKQNTAD QNKENGSSYV QFSNHSSGTV TNSPRADDDK 120 RQIQMTEVLK SQMEVQKTLQ EQLEVQKKLQ MRIEAQGKYL QAILEKAQKS LSFDIHSEEN 180 VEEKRAQLTN FNLPLSSLMD STNEADRKSN MAQMNDVIPT KANFSASFHG HGVGDREENK 240 HVKRKVEGDS INFDLNTKDS NEYGAVNGNQ LQSHLVFS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578082	4e-76	JX578082.1 Gossypium hirsutum clone NBRI_GE10029 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475594.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X2
Swissprot	Q9SAK5	4e-51	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A0D2S1M8	0.0	A0A0D2S1M8_G
STRING	POPTR_0001s01560.1	1e-100	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G180000.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]